Quirks in the compiler?

[ratgod]

Hi There,
I am using IDE,PCB,PCM and PCH version 4.071 and have been noticing something strange.
There is a set of code I am doing for work, based on the PIC18F2580. and it appears that when I compile and flash the code it works and sometimes if I re-compile and re-flash it doesn't act correctly, and this is even without changing the code.
I have a button input that makes the 2580 send a CAN message out (3 actually, 2 for backup) and some times when its been flashed it sends them out immediately every time, and then when its compiled and flashed another time it sometimes sends a message and sometimes thats delayed a couple of seconds.
Anyone experience this quirk with this version?

I would include my code to show what I have done, but I have been requested not to by management.

note, I am using the CCS ICD-U40 to program my PICs

[PCM programmer]

Open a DOS window and compare the hex files with the File Compare
command: